CIRCA: Circadian gene expression profiles.

Enter a search
(Examples 1451371_at 1422470_at gnf1m00037_a_at or Arntl or kinase inhibitor )

Query syntax mode: by gene symbol simple advanced

Choose probability filter
Probabily cut-off value ("0.5" or "2e-10")
JTK phase range ("0-6" or "10.30-11.10")

Output mode normal slim
Number of entries to download ("50" or "100", max: "1000")

Select one or more experiments to view

(If nothing is selected, CIRCA will search all experiments.)

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_025934 Probeset 1423481_at Links Wikipedia HomoloGene Symbol Riok2 Unigene Mm.35117 RefSeq Protein NP_080210 RefSeq DNA NM_025934 Description RIO kinase 2 (yeast)
	p-Value	q-Value	period	phase
JTK	5.69e-09	4.61e-07	24.0	14.5
Lomb Scargle	1.86e-05	0.00136182	23.946	20.99
DeLichtenberg	0.0687	0.63311	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_030685 Probeset 1415827_a_at Links Wikipedia HomoloGene Symbol Serp1 Unigene Mm.29702 RefSeq Protein NP_109610 RefSeq DNA NM_030685 Description stress-associated endoplasmic reticulum protein 1
	p-Value	q-Value	period	phase
JTK	5.69e-09	4.61e-07	22.0	20.5
Lomb Scargle	2.32e-05	0.00155474	22.725	1.35
DeLichtenberg	0.6524	1.0	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_019980 Probeset 1416304_at Links Wikipedia HomoloGene Symbol Litaf Unigene Mm.294753 RefSeq Protein NP_064364 RefSeq DNA NM_019980 Description LPS-induced TN factor
	p-Value	q-Value	period	phase
JTK	5.69e-09	4.61e-07	27.0	20.5
Lomb Scargle	2.49e-06	0.000414397	26.829	5.63
DeLichtenberg	0.0223	0.568452	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_009396 Probeset 1416273_at Links Wikipedia HomoloGene Symbol Tnfaip2 Unigene Mm.255332 RefSeq Protein NP_033422 RefSeq DNA NM_009396 Description tumor necrosis factor, alpha-induced protein 2
	p-Value	q-Value	period	phase
JTK	5.69e-09	4.61e-07	24.0	0.5
Lomb Scargle	0.000101	0.0041638	23.946	6.5
DeLichtenberg	0.0255	0.568452	24.0	NA
back to the top

			Experiment Mouse 1.OST Brown Adipose (Affymetrix) UCSC RNAseq RNAseq_NM_145434 Probeset 10390691 Links Wikipedia HomoloGene Symbol Nr1d1 Unigene Mm.390397 RefSeq Protein None RefSeq DNA NM_145434 Description nuclear receptor subfamily 1, group D, member 1
	p-Value	q-Value	period	phase
JTK	2.77038e-11	4.92518e-07	24.0	7.0
Lomb Scargle	0.000375	0.587859	23.892	7.1
DeLichtenberg	0.5592	1.0	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_001159657 RNAseq_NM_144883 Probeset 1456210_at Links Wikipedia HomoloGene Symbol 5430407P10Rik Unigene Mm.133542 RefSeq Protein NP_001153129 NP_659132 RefSeq DNA NM_001159657 NM_144883 Description RIKEN cDNA 5430407P10 gene
	p-Value	q-Value	period	phase
JTK	6.21e-09	5.02e-07	25.0	20.5
Lomb Scargle	0.000108	0.00436853	23.946	5.15
DeLichtenberg	0.0277	0.568452	24.0	NA
back to the top

			Experiment Mouse Pituitary 48 hour Hughes 2009 (Affymetrix) Probeset 1456510_x_at Links Wikipedia HomoloGene Symbol Higd1c Mettl7a2 Unigene Mm.440573 RefSeq Protein NP_001002900 NP_955771 RefSeq DNA NM_001002900 NM_199477 Description HIG1 domain family, member 1C /// methyltransferase like 7A2
	p-Value	q-Value	period	phase
JTK	3.44e-10	5.17e-07	24.0	14.5
Lomb Scargle	3.38e-06	0.00818939	23.946	21.3
DeLichtenberg	0.6022	1.0	24.0	NA
back to the top

			Experiment Mouse 1.OST Aorta (Affymetrix) UCSC RNAseq RNAseq_NM_011067 Probeset 10518781 Links Wikipedia HomoloGene Symbol Per3 Unigene Mm.121361 RefSeq Protein None RefSeq DNA NM_011067 Description period homolog 3 (Drosophila)
	p-Value	q-Value	period	phase
JTK	5.92042e-11	5.26266e-07	24.0	12.0
Lomb Scargle	0.0003	1.0	23.064	10.82
DeLichtenberg	0.5282	1.0	24.0	NA
back to the top

			Experiment Mouse 1.OST White Adipose (Affymetrix) UCSC RNAseq RNAseq_NM_011067 Probeset 10518781 Links Wikipedia HomoloGene Symbol Per3 Unigene Mm.121361 RefSeq Protein None RefSeq DNA NM_011067 Description period homolog 3 (Drosophila)
	p-Value	q-Value	period	phase
JTK	5.92042e-11	5.26266e-07	24.0	12.0
Lomb Scargle	0.0004	1.0	23.064	10.58
DeLichtenberg	0.3388	1.0	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_001136260 RNAseq_NM_001197147 RNAseq_NM_018760 Probeset 1452071_at Links Wikipedia HomoloGene Symbol Slc4a4 Unigene Mm.41044 RefSeq Protein NP_001129732 NP_001184076 NP_061230 RefSeq DNA NM_001136260 NM_001197147 NM_018760 Description solute carrier family 4 (anion exchanger), member 4
	p-Value	q-Value	period	phase
JTK	6.72e-09	5.35e-07	24.0	5.5
Lomb Scargle	1.05e-05	0.000976413	24.383	12.08
DeLichtenberg	0.0197	0.568452	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_145975 Probeset 1424571_at Links Wikipedia HomoloGene Symbol Ddx46 Unigene Mm.202725 RefSeq Protein NP_666087 RefSeq DNA NM_145975 Description DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
	p-Value	q-Value	period	phase
JTK	6.72e-09	5.35e-07	23.0	10.5
Lomb Scargle	5.01e-06	0.000621529	22.725	17.74
DeLichtenberg	0.3388	1.0	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_027249 Probeset 1432282_a_at Links Wikipedia HomoloGene Symbol Tlcd2 Unigene Mm.41393 RefSeq Protein NP_081525 RefSeq DNA NM_027249 Description TLC domain containing 2
	p-Value	q-Value	period	phase
JTK	6.72e-09	5.35e-07	26.0	22.5
Lomb Scargle	8.76e-06	0.000857017	25.794	7.01
DeLichtenberg	0.3152	1.0	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_009864 Probeset 1448261_at Links Wikipedia HomoloGene Symbol Cdh1 Unigene Mm.35605 RefSeq Protein NP_033994 RefSeq DNA NM_009864 Description cadherin 1
	p-Value	q-Value	period	phase
JTK	6.72e-09	5.35e-07	24.0	2.0
Lomb Scargle	1.89e-05	0.00137043	23.946	6.32
DeLichtenberg	0.0293	0.568452	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_181849 Probeset 1428079_at Links Wikipedia HomoloGene Symbol Fgb Unigene Mm.30063 RefSeq Protein NP_862897 RefSeq DNA NM_181849 Description fibrinogen beta chain
	p-Value	q-Value	period	phase
JTK	6.72e-09	5.35e-07	25.0	2.5
Lomb Scargle	1.47e-05	0.00117759	25.306	11.11
DeLichtenberg	0.9972	1.0	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_008667 Probeset 1417624_at Links Wikipedia HomoloGene Symbol Nab1 Unigene Mm.25903 RefSeq Protein NP_032693 RefSeq DNA NM_008667 Description Ngfi-A binding protein 1
	p-Value	q-Value	period	phase
JTK	6.72e-09	5.35e-07	26.5	9.0
Lomb Scargle	2.66e-05	0.00169927	24.836	16.25
DeLichtenberg	0.8748	1.0	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_028943 Probeset 1428663_at Links Wikipedia HomoloGene Symbol Sgms2 Unigene Mm.273360 RefSeq Protein NP_083219 RefSeq DNA NM_028943 Description sphingomyelin synthase 2
	p-Value	q-Value	period	phase
JTK	6.72e-09	5.35e-07	23.0	6.5
Lomb Scargle	2.39e-05	0.00158713	22.725	11.57
DeLichtenberg	0.0325	0.568452	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_001004364 RNAseq_NM_001098168 RNAseq_NM_001135192 Probeset 1436181_at Links Wikipedia HomoloGene Symbol Asap2 Unigene Mm.358946 RefSeq Protein NP_001004364 NP_001091637 NP_001128664 RefSeq DNA NM_001004364 NM_001098168 NM_001135192 Description ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
	p-Value	q-Value	period	phase
JTK	6.72e-09	5.35e-07	24.0	1.25
Lomb Scargle	5.22e-05	0.00267227	23.525	6.68
DeLichtenberg	0.004	0.568452	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_025685 Probeset 1429549_at Links Wikipedia HomoloGene Symbol Col27a1 Unigene Mm.194116 RefSeq Protein NP_079961 RefSeq DNA NM_025685 Description collagen, type XXVII, alpha 1
	p-Value	q-Value	period	phase
JTK	6.72e-09	5.35e-07	24.0	18.0
Lomb Scargle	0.000163	0.00570766	24.383	23.81
DeLichtenberg	0.0099	0.568452	24.0	NA
back to the top

			Experiment Mouse 1.OST Kidney (Affymetrix) UCSC RNAseq RNAseq_NM_011067 Probeset 10518781 Links Wikipedia HomoloGene Symbol Per3 Unigene Mm.121361 RefSeq Protein None RefSeq DNA NM_011067 Description period homolog 3 (Drosophila)
	p-Value	q-Value	period	phase
JTK	1.8569e-10	5.50201e-07	24.0	11.0
Lomb Scargle	0.000325	0.331718	23.064	10.26
DeLichtenberg	0.387	1.0	24.0	NA
back to the top

			Experiment Mouse 1.OST Lung (Affymetrix) UCSC RNAseq Probeset 10556487 Links None Symbol None Unigene None RefSeq Protein None RefSeq DNA Description
	p-Value	q-Value	period	phase
JTK	4.89762e-10	5.61741e-07	24.0	22.0
Lomb Scargle	0.000575	0.307798	23.892	21.95
DeLichtenberg	0.3223	1.0	24.0	NA
back to the top