CIRCA: Circadian gene expression profiles.

Enter a search
(Examples 1451371_at 1422470_at gnf1m00037_a_at or Arntl or kinase inhibitor )

Query syntax mode: by gene symbol simple advanced

Choose probability filter
Probabily cut-off value ("0.5" or "2e-10")
JTK phase range ("0-6" or "10.30-11.10")

Output mode normal slim
Number of entries to download ("50" or "100", max: "1000")

Select one or more experiments to view

(If nothing is selected, CIRCA will search all experiments.)

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_007679 Probeset 1423233_at Links Wikipedia HomoloGene Symbol Cebpd Unigene Mm.347407 RefSeq Protein NP_031705 RefSeq DNA NM_007679 Description CCAAT/enhancer binding protein (C/EBP), delta
	p-Value	q-Value	period	phase
JTK	4.06e-09	3.45e-07	23.5	14.0
Lomb Scargle	0.000843	0.0181828	23.525	19.68
DeLichtenberg	0.0214	0.568452	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_007898 Probeset 1416667_at Links Wikipedia HomoloGene Symbol Ebp Unigene Mm.27183 RefSeq Protein NP_031924 RefSeq DNA NM_007898 Description phenylalkylamine Ca2+ antagonist (emopamil) binding protein
	p-Value	q-Value	period	phase
JTK	4.06e-09	3.45e-07	28.0	19.5
Lomb Scargle	0.000132	0.00498187	27.379	5.66
DeLichtenberg	0.3754	1.0	24.0	NA
back to the top

			Experiment Mouse Wild Type Muscle (GNF microarray) Probeset gnf1m31813_at Links Wikipedia HomoloGene Symbol Gm1157 Unigene Mm.244510 RefSeq Protein None RefSeq DNA NM_001033473 Description gene model 1157, (NCBI)
	p-Value	q-Value	period	phase
JTK	0.00182071	3.52e-07	28.0	0.0
Lomb Scargle	0.0241	1.0	25.357	9.13
DeLichtenberg	0.0002	0.0709451	24.0	NA
back to the top

			Experiment Mouse 1.OST Lung (Affymetrix) UCSC RNAseq RNAseq_NM_133903 Probeset 10529264 Links Wikipedia HomoloGene Symbol Spon2 Unigene Mm.34694 RefSeq Protein None RefSeq DNA NM_133903 Description spondin 2, extracellular matrix protein
	p-Value	q-Value	period	phase
JTK	2.48458e-10	3.53366e-07	24.0	1.0
Lomb Scargle	0.00144	0.307798	23.064	23.57
DeLichtenberg	0.2225	1.0	24.0	NA
back to the top

			Experiment Mouse 1.OST Lung (Affymetrix) UCSC RNAseq RNAseq_NM_013461 Probeset 10416099 Links Wikipedia HomoloGene Symbol Adra1a Unigene Mm.57064 RefSeq Protein None RefSeq DNA NM_013461 Description adrenergic receptor, alpha 1a
	p-Value	q-Value	period	phase
JTK	2.48458e-10	3.53366e-07	24.0	23.0
Lomb Scargle	0.000395	0.307798	23.064	22.05
DeLichtenberg	0.6532	1.0	24.0	NA
back to the top

			Experiment Mouse 1.OST Lung (Affymetrix) UCSC RNAseq RNAseq_NM_172563 Probeset 10389786 Links Wikipedia HomoloGene Symbol Hlf Unigene Mm.158903 RefSeq Protein None RefSeq DNA NM_172563 Description hepatic leukemia factor
	p-Value	q-Value	period	phase
JTK	2.48458e-10	3.53366e-07	24.0	12.0
Lomb Scargle	0.000403	0.307798	23.064	10.39
DeLichtenberg	0.4401	1.0	24.0	NA
back to the top

			Experiment Mouse 1.OST Lung (Affymetrix) UCSC RNAseq RNAseq_NM_007742 Probeset 10380419 Links Wikipedia HomoloGene Symbol Col1a1 Unigene Mm.277735 RefSeq Protein None RefSeq DNA NM_007742 Description collagen, type I, alpha 1
	p-Value	q-Value	period	phase
JTK	2.48458e-10	3.53366e-07	24.0	4.0
Lomb Scargle	0.00134	0.307798	23.064	3.31
DeLichtenberg	0.9904	1.0	24.0	NA
back to the top

			Experiment Mouse 1.OST Lung (Affymetrix) UCSC RNAseq RNAseq_NM_153484 RNAseq_NM_017376 Probeset 10425601 Links Wikipedia HomoloGene Symbol Tef Unigene Mm.270278 RefSeq Protein None RefSeq DNA NM_153484 NM_017376 Description thyrotroph embryonic factor
	p-Value	q-Value	period	phase
JTK	2.48458e-10	3.53366e-07	24.0	12.0
Lomb Scargle	0.000317	0.307798	23.064	10.36
DeLichtenberg	0.6623	1.0	24.0	NA
back to the top

			Experiment Mouse Pituitary 48 hour Hughes 2009 (Affymetrix) Probeset 1418932_at Links Wikipedia HomoloGene Symbol Nfil3 Unigene Mm.136604 RefSeq Protein NP_059069 RefSeq DNA NM_017373 Description nuclear factor, interleukin 3, regulated
	p-Value	q-Value	period	phase
JTK	2.38e-10	3.7e-07	23.0	22.5
Lomb Scargle	6.9e-06	0.0117424	23.118	5.44
DeLichtenberg	0.0086	0.123368	24.0	NA
back to the top

			Experiment Mouse Pituitary 48 hour Hughes 2009 (Affymetrix) Probeset 1420667_at Links Wikipedia HomoloGene Symbol Doc2b Unigene Mm.5137 RefSeq Protein NP_031899 RefSeq DNA NM_007873 Description double C2, beta
	p-Value	q-Value	period	phase
JTK	2.38e-10	3.7e-07	24.0	12.5
Lomb Scargle	0.00058	0.164519	23.118	18.79
DeLichtenberg	0.0	0.0	24.0	NA
back to the top

			Experiment Mouse Pituitary 48 hour Hughes 2009 (Affymetrix) Probeset 1449081_at Links Wikipedia HomoloGene Symbol Ces1d Unigene Mm.292803 RefSeq Protein NP_444430 RefSeq DNA NM_053200 Description carboxylesterase 1D
	p-Value	q-Value	period	phase
JTK	2.38e-10	3.7e-07	24.0	19.0
Lomb Scargle	2.45e-05	0.0231948	24.383	0.39
DeLichtenberg	0.0407	0.325694	24.0	NA
back to the top

			Experiment Mouse Pituitary 48 hour Hughes 2009 (Affymetrix) Probeset 1457250_x_at Links Wikipedia HomoloGene Symbol Nr1d2 Unigene Mm.26587 RefSeq Protein NP_035714 RefSeq DNA NM_011584 Description Nuclear receptor subfamily 1, group D, member 2
	p-Value	q-Value	period	phase
JTK	2.17e-10	3.7e-07	25.0	11.0
Lomb Scargle	6.26e-06	0.0112933	24.383	18.03
DeLichtenberg	0.0898	0.575131	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_008303 Probeset 1422579_at Links Wikipedia HomoloGene Symbol Hspe1 Unigene Mm.215667 RefSeq Protein NP_032329 RefSeq DNA NM_008303 Description heat shock protein 1 (chaperonin 10)
	p-Value	q-Value	period	phase
JTK	4.44e-09	3.76e-07	23.6667	18.6667
Lomb Scargle	4.56e-06	0.000585928	23.946	0.7
DeLichtenberg	0.5167	1.0	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_026001 Probeset 1453001_at Links Wikipedia HomoloGene Symbol Rnaseh2b Unigene Mm.26040 RefSeq Protein NP_080277 RefSeq DNA NM_026001 Description ribonuclease H2, subunit B
	p-Value	q-Value	period	phase
JTK	4.81e-09	3.95e-07	23.0	15.5
Lomb Scargle	3.79e-06	0.000534165	23.525	23.85
DeLichtenberg	0.0667	0.624533	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_009112 Probeset 1416762_at Links Wikipedia HomoloGene Symbol S100a10 Unigene Mm.1 RefSeq Protein NP_033138 RefSeq DNA NM_009112 Description S100 calcium binding protein A10 (calpactin)
	p-Value	q-Value	period	phase
JTK	4.81e-09	3.95e-07	23.0	1.5
Lomb Scargle	5.56e-06	0.000659351	23.946	7.62
DeLichtenberg	0.0351	0.568452	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_019479 Probeset 1452021_a_at Links Wikipedia HomoloGene Symbol Hes6 Unigene Mm.280029 RefSeq Protein NP_062352 RefSeq DNA NM_019479 Description hairy and enhancer of split 6 (Drosophila)
	p-Value	q-Value	period	phase
JTK	4.81e-09	3.95e-07	25.0	17.5
Lomb Scargle	4.54e-06	0.000585928	24.836	0.12
DeLichtenberg	0.0447	0.578713	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_175093 Probeset 1456225_x_at Links Wikipedia HomoloGene Symbol Trib3 Unigene Mm.276018 RefSeq Protein NP_780302 RefSeq DNA NM_175093 Description tribbles homolog 3 (Drosophila)
	p-Value	q-Value	period	phase
JTK	4.81e-09	3.95e-07	24.0	6.25
Lomb Scargle	4.15e-06	0.000555398	22.725	14.09
DeLichtenberg	0.0001	0.0437874	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_008537 Probeset 1417208_at Links Wikipedia HomoloGene Symbol Amacr Unigene Mm.2787 RefSeq Protein NP_032563 RefSeq DNA NM_008537 Description alpha-methylacyl-CoA racemase
	p-Value	q-Value	period	phase
JTK	4.81e-09	3.95e-07	23.0	7.0
Lomb Scargle	2.48e-06	0.000414397	22.345	13.94
DeLichtenberg	0.6412	1.0	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_172679 Probeset 1427016_at Links Wikipedia HomoloGene Symbol 4932438A13Rik Unigene Mm.207907 RefSeq Protein NP_766267 RefSeq DNA NM_172679 Description RIKEN cDNA 4932438A13 gene
	p-Value	q-Value	period	phase
JTK	4.81e-09	3.95e-07	23.0	1.5
Lomb Scargle	6.86e-06	0.000749135	22.725	7.47
DeLichtenberg	0.0661	0.624533	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_XR_105962 RNAseq_XR_107176 Probeset 1431806_at Links Wikipedia HomoloGene Symbol 4931408D14Rik Unigene None RefSeq Protein None RefSeq DNA XR_105962 XR_107176 Description RIKEN cDNA 4931408D14 gene
	p-Value	q-Value	period	phase
JTK	4.81e-09	3.95e-07	22.0	10.0
Lomb Scargle	6.54e-06	0.000726504	22.725	16.98
DeLichtenberg	0.0001	0.0437874	24.0	NA
back to the top