CIRCA

NEWS (6/9/2014): We added two new datasets: "Mouse Macrophages" and "Mouse Heart LD"

(Examples 1451371_at 1422470_at gnf1m00037_a_at or Arntl or kinase inhibitor )
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1420478_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_001146707
RNAseq_NM_015781

Probeset 1420478_at

Links Wikipedia HomoloGene

Symbol Nap1l1

Unigene Mm.290407

RefSeq Protein NP_001140179   NP_056596

RefSeq DNA NM_001146707
NM_015781

Description nucleosome assembly protein 1-like 1
Experiment help page p-Value q-Value period phase
JTK 4.57e-12 9.77e-10 25.0 19.0
Lomb Scargle 1.47e-06 0.000302733 24.383 2.0
DeLichtenberg 0.618 1.0 24.0 NA
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1415796_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_011873

Probeset 1415796_at

Links Wikipedia HomoloGene

Symbol Dazap2

Unigene Mm.476736

RefSeq Protein NP_036003

RefSeq DNA NM_011873

Description DAZ associated protein 2
Experiment help page p-Value q-Value period phase
JTK 4.57e-12 9.77e-10 24.0 5.0
Lomb Scargle 1.98e-06 0.000372083 23.525 11.31
DeLichtenberg 0.7782 1.0 24.0 NA
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1427893_a_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_026784
RNAseq_NM_027348

Probeset 1427893_a_at

Links Wikipedia HomoloGene

Symbol Pmvk

Unigene Mm.34242

RefSeq Protein NP_081060   NP_081624

RefSeq DNA NM_026784
NM_027348

Description phosphomevalonate kinase
Experiment help page p-Value q-Value period phase
JTK 4.57e-12 9.77e-10 26.0 19.75
Lomb Scargle 1.2e-06 0.000270606 25.306 5.09
DeLichtenberg 0.0198 0.568452 24.0 NA
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1455959_s_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_010295

Probeset 1455959_s_at

Links Wikipedia HomoloGene

Symbol Gclc

Unigene Mm.89888

RefSeq Protein NP_034425

RefSeq DNA NM_010295

Description glutamate-cysteine ligase, catalytic subunit
Experiment help page p-Value q-Value period phase
JTK 4.57e-12 9.77e-10 25.0 2.5
Lomb Scargle 2.26e-06 0.000398157 24.836 10.52
DeLichtenberg 0.0539 0.593896 24.0 NA
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1423413_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_008681

Probeset 1423413_at

Links Wikipedia HomoloGene

Symbol Ndrg1

Unigene Mm.30837

RefSeq Protein NP_032707

RefSeq DNA NM_008681

Description N-myc downstream regulated gene 1
Experiment help page p-Value q-Value period phase
JTK 4.57e-12 9.77e-10 26.0 1.5
Lomb Scargle 3.62e-06 0.000521615 24.383 9.51
DeLichtenberg 0.0014 0.295053 24.0 NA
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1453259_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_173767

Probeset 1453259_at

Links Wikipedia HomoloGene

Symbol Insc

Unigene Mm.83037

RefSeq Protein NP_776128

RefSeq DNA NM_173767

Description inscuteable homolog (Drosophila)
Experiment help page p-Value q-Value period phase
JTK 4.57e-12 9.77e-10 26.0 19.5
Lomb Scargle 2.75e-06 0.000444544 24.836 5.35
DeLichtenberg 0.0127 0.568452 24.0 NA
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1460314_s_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_013548
RNAseq_NM_013550
RNAseq_NM_054045
RNAseq_NM_145073
RNAseq_NM_175653
RNAseq_NM_178203
RNAseq_NM_178204
RNAseq_NM_178205
RNAseq_NM_178206
RNAseq_NM_178207
RNAseq_NM_178215
RNAseq_NM_178216

Probeset 1460314_s_at

Links Wikipedia HomoloGene

Symbol Hist1h3a
Hist1h3b
Hist1h3c
Hist1h3d
Hist1h3e
Hist1h3f
Hist1h3g
Hist1h3h
Hist1h3i
Hist2h3b
Hist2h3c1
Hist2h3c2-ps

Unigene Mm.342457

RefSeq Protein NP_038576   NP_038578   NP_473386   NP_659539   NP_783584   NP_835510   NP_835511   NP_835512   NP_835513   NP_835514   NP_835587   NP_835734

RefSeq DNA NM_013548
NM_013550
NM_054045
NM_145073
NM_175653
NM_178203
NM_178204
NM_178205
NM_178206
NM_178207
NM_178215
NM_178216

Description histone cluster 1, H3a /// histone cluster 1, H3b /// histone cluster 1, H3c /// histone cluster 1, H3d /// histone cluster 1, H3e /// histone cluster 1, H3f /// histone cluster 1, H3g /// histone cluster 1, H3h /// histone cluster 1, H3i /// histone cluster 2, H3b /// histone cluster 2, H3c1 /// histone cluster 2, H3c2, pseudogene
Experiment help page p-Value q-Value period phase
JTK 4.57e-12 9.77e-10 26.0 18.25
Lomb Scargle 1.76e-05 0.00131857 26.302 0.78
DeLichtenberg 0.0002 0.0798248 24.0 NA
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1431339_a_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_025994

Probeset 1431339_a_at

Links Wikipedia HomoloGene

Symbol Efhd2

Unigene Mm.395598

RefSeq Protein NP_080270

RefSeq DNA NM_025994

Description EF hand domain containing 2
Experiment help page p-Value q-Value period phase
JTK 5.1e-12 1.09e-09 23.0 13.0
Lomb Scargle 3.17e-06 0.000481381 22.345 18.9
DeLichtenberg 0.0212 0.568452 24.0 NA
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1426215_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_001190448
RNAseq_NM_016672

Probeset 1426215_at

Links Wikipedia HomoloGene

Symbol Ddc

Unigene Mm.12906

RefSeq Protein NP_001177377   NP_057881

RefSeq DNA NM_001190448
NM_016672

Description dopa decarboxylase
Experiment help page p-Value q-Value period phase
JTK 5.64e-12 1.16e-09 24.0 23.0
Lomb Scargle 3.84e-07 0.000157443 23.946 6.07
DeLichtenberg 0.0073 0.568452 24.0 NA
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1452053_a_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_028975
RNAseq_NM_030108

Probeset 1452053_a_at

Links Wikipedia HomoloGene

Symbol Tmem33

Unigene Mm.23217

RefSeq Protein NP_083251   NP_084384

RefSeq DNA NM_028975
NM_030108

Description transmembrane protein 33
Experiment help page p-Value q-Value period phase
JTK 5.64e-12 1.16e-09 24.0 19.75
Lomb Scargle 4.01e-07 0.000159436 23.525 2.86
DeLichtenberg 0.2339 1.0 24.0 NA
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1417673_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_016719

Probeset 1417673_at

Links Wikipedia HomoloGene

Symbol Grb14

Unigene Mm.214554

RefSeq Protein NP_057928

RefSeq DNA NM_016719

Description growth factor receptor bound protein 14
Experiment help page p-Value q-Value period phase
JTK 5.64e-12 1.16e-09 24.0 5.0
Lomb Scargle 9.02e-07 0.000240717 23.946 12.12
DeLichtenberg 0.1002 0.736973 24.0 NA
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1418301_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_016851

Probeset 1418301_at

Links Wikipedia HomoloGene

Symbol Irf6

Unigene Mm.273695

RefSeq Protein NP_058547

RefSeq DNA NM_016851

Description interferon regulatory factor 6
Experiment help page p-Value q-Value period phase
JTK 5.64e-12 1.16e-09 25.0 0.0
Lomb Scargle 1.19e-06 0.000270606 24.383 6.54
DeLichtenberg 0.0421 0.578713 24.0 NA
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1451361_a_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_146251

Probeset 1451361_a_at

Links Wikipedia HomoloGene

Symbol Pnpla7

Unigene Mm.389243

RefSeq Protein NP_666363

RefSeq DNA NM_146251

Description patatin-like phospholipase domain containing 7
Experiment help page p-Value q-Value period phase
JTK 5.64e-12 1.16e-09 24.0 2.5
Lomb Scargle 2.99e-06 0.000463366 23.946 9.3
DeLichtenberg 0.1055 0.754894 24.0 NA
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1428471_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_001034962
RNAseq_NM_001034963
RNAseq_NM_001034964
RNAseq_NM_009166
RNAseq_NM_178362

Probeset 1428471_at

Links Wikipedia HomoloGene

Symbol Sorbs1

Unigene Mm.210815

RefSeq Protein NP_001030134   NP_001030135   NP_001030136   NP_033192   NP_848139

RefSeq DNA NM_001034962
NM_001034963
NM_001034964
NM_009166
NM_178362

Description sorbin and SH3 domain containing 1
Experiment help page p-Value q-Value period phase
JTK 5.64e-12 1.16e-09 23.0 8.0
Lomb Scargle 3.05e-06 0.000469481 22.725 15.18
DeLichtenberg 0.048 0.58548 24.0 NA
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1417168_a_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_016808
RNAseq_NM_198091
RNAseq_NM_198092

Probeset 1417168_a_at

Links Wikipedia HomoloGene

Symbol Usp2

Unigene Mm.272770

RefSeq Protein NP_058088   NP_932759   NP_932760

RefSeq DNA NM_016808
NM_198091
NM_198092

Description ubiquitin specific peptidase 2
Experiment help page p-Value q-Value period phase
JTK 5.64e-12 1.16e-09 22.0 13.0
Lomb Scargle 9.15e-06 0.00087803 22.345 18.48
DeLichtenberg 0.0 0.0 24.0 NA
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1421087_at Data
Experiment Mouse NIH 3T3 Immortilized Cell Line 48 hour Hughes 2009 (Affymetrix)

Probeset 1421087_at

Links Wikipedia HomoloGene

Symbol Per3

Unigene Mm.121361

RefSeq Protein NP_035197

RefSeq DNA NM_011067

Description period homolog 3 (Drosophila)
Experiment help page p-Value q-Value period phase
JTK 5.15e-14 1.16e-09 23.0 1.5
Lomb Scargle 5.85e-07 0.0087947 23.118 6.0
DeLichtenberg 0.0041 0.162885 24.0 NA
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1424712_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_026375

Probeset 1424712_at

Links Wikipedia HomoloGene

Symbol Ahctf1

Unigene Mm.128165

RefSeq Protein NP_080651

RefSeq DNA NM_026375

Description AT hook containing transcription factor 1
Experiment help page p-Value q-Value period phase
JTK 6.94e-12 1.4e-09 24.0 21.0
Lomb Scargle 8.67e-07 0.000235438 24.383 5.01
DeLichtenberg 0.2 1.0 24.0 NA
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1433505_a_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_001122768
RNAseq_NM_178701

Probeset 1433505_a_at

Links Wikipedia HomoloGene

Symbol Lrrc8d

Unigene Mm.23837

RefSeq Protein NP_001116240   NP_848816

RefSeq DNA NM_001122768
NM_178701

Description leucine rich repeat containing 8D
Experiment help page p-Value q-Value period phase
JTK 6.94e-12 1.4e-09 25.0 2.0
Lomb Scargle 4.39e-06 0.000578184 24.836 9.24
DeLichtenberg 0.0969 0.726469 24.0 NA
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1425344_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_026272

Probeset 1425344_at

Links Wikipedia HomoloGene

Symbol Narf

Unigene Mm.291832

RefSeq Protein NP_080548

RefSeq DNA NM_026272

Description nuclear prelamin A recognition factor
Experiment help page p-Value q-Value period phase
JTK 6.94e-12 1.4e-09 22.0 11.75
Lomb Scargle 4.93e-06 0.000617633 22.345 17.95
DeLichtenberg 0.0127 0.568452 24.0 NA
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1426515_a_at Data
Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix)

UCSC RNAseq RNAseq_NM_144884

Probeset 1426515_a_at

Links Wikipedia HomoloGene

Symbol Tor1a

Unigene Mm.154994

RefSeq Protein NP_659133

RefSeq DNA NM_144884

Description torsin family 1, member A (torsin A)
Experiment help page p-Value q-Value period phase
JTK 6.94e-12 1.4e-09 23.0 14.0
Lomb Scargle 1.29e-05 0.00110434 23.118 21.45
DeLichtenberg 0.5988 1.0 24.0 NA
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CIRCA